Saturday, December 19, 2009

Genious software

Winappz Geneious Pro v4.8.3 32.9 MBGeneious combines all the leading DNA and protein sequence analysis tools into one revolutionary software solution! Its ease of use makes bioinformatics accessible to any biologist.
It runs on all major operating systems and is very affordable. Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis, contig assembly, primer design and cloning, access to NCBI and UniProt, BLAST, protein structure viewing, automated PubMed searching, and more. It even includes an API for creating your own plugins.Popular Geneious Pro use casesHere are just some examples of everyday research work that Geneious Pro can do for you.Sequence Analysis:Pairwise and multiple sequence alignment including ClustalW, MUSCLE, Progressive pairwise and translation alignmentPhylogenetic tree building with NJ, bootstrapping, consensus trees and plugins for PAUP* and MrBayesConsensus sequence, translation, complement and protein statistics update as you editFind motifs, open reading frames (ORFs)Lab End Sequence Analysis:Contig assembly with automated trimming, vector screening, assembly, and chromatogram editing454 import and reference assembly with support for viewing large assembliesRestriction and Gateway® Cloning, restriction mapping, digestion and ligationAutomated primer design with degeneracy supportKeep a primer database and search for primers which match new sequences.Sequence Visualization:Customizable graphical viewer and editor of sequences, alignments and annotationsFully interactive, customizable plasmid mapsNavigate chromosomes and genomesPhylogenetic tree viewer with customizable layout, color and styleGraphs updated real-time including sequence logos, chromatogram traces and protein properties3D protein structure viewingFast, interactive dot plotsEasy image export to publication quality formats and More…Organize and share data:Store and organize all of your research material in one place including sequences, publications, trees and moreExtensive import and export including Vector NTI, Nexus, GenBank, Fasta, PDF, ABI and many more!Collaborate and share data over the internet or on a secure, central server.Search and sort sequences by similarity, basic and advanced text searching of dataAttach structured information to sequences, alignments and trees.Access public databases:Drag and drop sequences from NCBI (including Gene, Genome, Nucleotide, SNP, Structure and Protein)NCBI BLAST sequences with two clicks of the mouseKeeps your NCBI and EMBL downloads up to date automaticallyClose integration with Pfam databasesA unique method of rapidly filtering public data as it downloads.Teach Bioinformatics:Create interactive tutorials with direct links to material in GeneiousAll the tools a budding bioinformatician may need is just a click awayStudents can answer question, do analyses then submit their results using Collaboration.Manage references:Automatically retrieves newly published articles from PubMed and can sort them based on your interestsStorage of abstracts and bibliographic informationQuick links to find original articles and citation record online.Download
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